The command file -open -loadReferenceDepth “none” allows you to open your scene without any references loaded, it is very useful for debugging or just opening a scene faster and loading only what you need to for you to work.
But if you have opened your file with this command, there is a new behaviour in Maya 2015 regarding the loading of nested references after the initial loading of the scene.
Sounds like a bug to me, but who knows?
For more information about the different ways of opening scenes, check this article by Owen Burgess on Maya Station.